MRIQC: individual T1w report

Summary

Subject ID: 048_ExercisePre.
Date and time: 2018-05-06, 23:14.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.32150331477245453
cnr			3.9495625658318803
efc			0.5912950617195897
fber			80.33953857421875
fwhm	avg		3.8896866666666665
fwhm	x		3.72127
fwhm	y		4.06265
fwhm	z		3.88514
icvs	csf		0.20672051270187364
icvs	gm		0.4620397831691475
icvs	wm		0.33123970412897885
inu	med		1.073140025138855
inu	range		0.39830554127693185
qi	1		0.0
qi	2		0.0010245997954845538
rpve	csf		27.884646895750173
rpve	gm		13.632320461419427
rpve	wm		21.26862203731033
size	x		180
size	y		256
size	z		256
snr	csf		2.4821510348600984
snr	gm		10.051530541371195
snr	total		9.421833205069868
snr	wm		15.731818038978314
snrd	csf		9.745452501977459
snrd	gm		21.863973053910172
snrd	total		22.026300593242567
snrd	wm		34.46947622384007
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	3.116984591799188
summary	bg	mad	19.006839752197266
summary	bg	mean	59.093692779541016
summary	bg	median	54.23350143432617
summary	bg	n	2857950.0
summary	bg	p05	31.164661502838136
summary	bg	p95	104.52978782653807
summary	bg	stdv	23.46982192993164
summary	csf	k	0.7147028539124691
summary	csf	mad	108.3433609008789
summary	csf	mean	297.238525390625
summary	csf	median	282.73541259765625
summary	csf	n	12320.0
summary	csf	p05	135.38227767944338
summary	csf	p95	502.5098281860352
summary	csf	stdv	113.90279388427734
summary	gm	k	0.26494598078177223
summary	gm	mad	60.87383270263672
summary	gm	mean	635.896728515625
summary	gm	median	634.318359375
summary	gm	n	26420.0
summary	gm	p05	534.4528869628906
summary	gm	p95	740.9185516357422
summary	gm	stdv	63.10544967651367
summary	wm	k	0.8580957777868798
summary	wm	mad	56.70356369018555
summary	wm	mean	997.95703125
summary	wm	median	1000.0296630859375
summary	wm	n	141074.0
summary	wm	p05	884.6456298828125
summary	wm	p95	1097.196435546875
summary	wm	stdv	63.56710433959961
tpm	overlap	csf	0.19899986684322357
tpm	overlap	gm	0.5200638175010681
tpm	overlap	wm	0.5138612389564514
wm2max			0.6505030268293771

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	25dac1d2e813a5ef35ec736fc775ad80
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.