MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.32150331477245453
cnr3.9495625658318803
efc0.5912950617195897
fber80.33953857421875
fwhmavg3.8896866666666665
fwhmx3.72127
fwhmy4.06265
fwhmz3.88514
icvscsf0.20672051270187364
icvsgm0.4620397831691475
icvswm0.33123970412897885
inumed1.073140025138855
inurange0.39830554127693185
qi10.0
qi20.0010245997954845538
rpvecsf27.884646895750173
rpvegm13.632320461419427
rpvewm21.26862203731033
sizex180
sizey256
sizez256
snrcsf2.4821510348600984
snrgm10.051530541371195
snrtotal9.421833205069868
snrwm15.731818038978314
snrdcsf9.745452501977459
snrdgm21.863973053910172
snrdtotal22.026300593242567
snrdwm34.46947622384007
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk3.116984591799188
summarybgmad19.006839752197266
summarybgmean59.093692779541016
summarybgmedian54.23350143432617
summarybgn2857950.0
summarybgp0531.164661502838136
summarybgp95104.52978782653807
summarybgstdv23.46982192993164
summarycsfk0.7147028539124691
summarycsfmad108.3433609008789
summarycsfmean297.238525390625
summarycsfmedian282.73541259765625
summarycsfn12320.0
summarycsfp05135.38227767944338
summarycsfp95502.5098281860352
summarycsfstdv113.90279388427734
summarygmk0.26494598078177223
summarygmmad60.87383270263672
summarygmmean635.896728515625
summarygmmedian634.318359375
summarygmn26420.0
summarygmp05534.4528869628906
summarygmp95740.9185516357422
summarygmstdv63.10544967651367
summarywmk0.8580957777868798
summarywmmad56.70356369018555
summarywmmean997.95703125
summarywmmedian1000.0296630859375
summarywmn141074.0
summarywmp05884.6456298828125
summarywmp951097.196435546875
summarywmstdv63.56710433959961
tpmoverlapcsf0.19899986684322357
tpmoverlapgm0.5200638175010681
tpmoverlapwm0.5138612389564514
wm2max0.6505030268293771

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum25dac1d2e813a5ef35ec736fc775ad80
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.